3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08943

Details:

PFam ID : PF08943

PFam Domain Description : CsiD

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 25

Average sequence length: 262.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08943	A8GME7_RICAH_35_111	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08943	Q4FKY1_PELUB_6_301	100

Sequence based PCA Plot of the family - PF08943 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay