3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08942

Details:

PFam ID : PF08942

PFam Domain Description : Domain of unknown function (DUF1919)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 48

Average sequence length: 185.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08942	E1YUF7_9BACE_1_131	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08942	E9FLY5_9STRE_235_456	100

Sequence based PCA Plot of the family - PF08942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=84 Length=8
Motif3 Start=48 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay