3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08940

Details:

PFam ID : PF08940

PFam Domain Description : Domain of unknown function (DUF1918)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 66

Average sequence length: 55.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08940	A6S7R5_BOTFB_31_202	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08940	Q9XCD1_THEFU_1_34	100

Sequence based PCA Plot of the family - PF08940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=8
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay