3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08939

Details:

PFam ID : PF08939

PFam Domain Description : Domain of unknown function (DUF1917)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 71

Average sequence length: 180.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08939	A6S7R5_BOTFB_31_202	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08939	D1Z5A7_SORMK_50_345	100

Sequence based PCA Plot of the family - PF08939 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=55 Length=17
Motif2 Start=94 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay