3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08938

Details:

PFam ID : PF08938

PFam Domain Description : Domain of unknown function (DUF1916)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 44

Average sequence length: 130.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08938	A7RM16_NEMVE_1_155	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08938	A7RM16_NEMVE_1_155	97.6

Sequence based PCA Plot of the family - PF08938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay