3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08937

Details:

PFam ID : PF08937

PFam Domain Description : MTH538 TIR-like domain (DUF1863)

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 230

Average sequence length: 126.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08937	F0LF94_9RHIZ_14_114	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08937	D4V764_BACVU_1_119	100

Sequence based PCA Plot of the family - PF08937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay