3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08935

Details:

PFam ID : PF08935

PFam Domain Description : Viral protein VP4 subunit

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 24

Average sequence length: 71.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08935	B3S7L6_TRIAD_663_761	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08935	Q91B33_9PICO_1_80	100

Sequence based PCA Plot of the family - PF08935 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay