3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08926

Details:

PFam ID : PF08926

PFam Domain Description : Domain of unknown function (DUF1908)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 62

Average sequence length: 216.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08926	F1KQS9_ASCSU_348_494	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08926	C4QF36_SCHMA_1_157	100

Sequence based PCA Plot of the family - PF08926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay