3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08925

Details:

PFam ID : PF08925

PFam Domain Description : Domain of Unknown Function (DUF1907)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 65

Average sequence length: 239.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08925	C4QTC5_SCHMA_1_53	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08925	E2A095_9HYME_15_322	100

Sequence based PCA Plot of the family - PF08925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay