3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08924

Details:

PFam ID : PF08924

PFam Domain Description : Domain of unknown function (DUF1906)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 175

Average sequence length: 130.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08924	D7UWZ5_LISGR_2_54	65.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08924	E9UX44_9ACTO_53_206	100

Sequence based PCA Plot of the family - PF08924 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=1 Length=8
Motif3 Start=79 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay