3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08923

Details:

PFam ID : PF08923

PFam Domain Description : Mitogen-activated protein kinase kinase 1 interacting

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 49

Average sequence length: 111.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08923	B7PII7_IXOSC_1_76	56

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08923	D2VFP9_NAEGR_34_171	100

Sequence based PCA Plot of the family - PF08923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay