3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08922

Details:

PFam ID : PF08922

PFam Domain Description : Domain of unknown function (DUF1905)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 197

Average sequence length: 81.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08922	C6VUN2_DYAFD_7_88	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08922	E3B5U4_9SPHI_5_89	100

Sequence based PCA Plot of the family - PF08922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=73 Length=8
Motif3 Start=60 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay