3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08921

Details:

PFam ID : PF08921

PFam Domain Description : Domain of unknown function (DUF1904)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 65

Average sequence length: 102.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08921	E3GEU3_EUBLK_1_107	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08921	A4SQR6_AERS4_1_109	100

Sequence based PCA Plot of the family - PF08921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=101 Length=8
Motif3 Start=1 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay