3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08919

Details:

PFam ID : PF08919

PFam Domain Description : F-actin binding

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 16

Average sequence length: 135.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08919	D6WHP4_TRICA_1153_1334	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08919	D6WHP4_TRICA_1153_1334	100

Sequence based PCA Plot of the family - PF08919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay