3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08915

Details:

PFam ID : PF08915

PFam Domain Description : Archaea-specific editing domain of threonyl-tRNA synthetase

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 84

Average sequence length: 134.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08915	C7DIE2_9EURY_1_137	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08915	C7DIE2_9EURY_1_137	100

Sequence based PCA Plot of the family - PF08915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=125 Length=11
Motif3 Start=76 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay