3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08911

Details:

PFam ID : PF08911

PFam Domain Description : NUP50 (Nucleoporin 50 kDa)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 96

Average sequence length: 73.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08911	A7RJ72_NEMVE_7_114	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08911	Q6AYL1_RAT_2_67	100

Sequence based PCA Plot of the family - PF08911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay