3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08908

Details:

PFam ID : PF08908

PFam Domain Description : Domain of unknown function (DUF1852)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 103

Average sequence length: 314.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08908	D8QNQ5_SELML_171_444	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08908	E8NET7_MICTS_1_320	100

Sequence based PCA Plot of the family - PF08908 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=79 Length=8
Motif2 Start=6 Length=19
Motif3 Start=41 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay