3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08907

Details:

PFam ID : PF08907

PFam Domain Description : Domain of unknown function (DUF1853)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 161

Average sequence length: 259.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08907	D8QNQ5_SELML_171_444	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08907	Q21JY7_SACD2_23_341	100

Sequence based PCA Plot of the family - PF08907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=91 Length=8
Motif2 Start=123 Length=8
Motif3 Start=1 Length=11
Motif4 Start=107 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay