3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08905

Details:

PFam ID : PF08905

PFam Domain Description : Domain of unknown function (DUF1850)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 143

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08905	A6GSJ3_9BURK_19_116	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08905	D6GPT0_FILAD_50_143	100

Sequence based PCA Plot of the family - PF08905 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay