3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08904

Details:

PFam ID : PF08904

PFam Domain Description : Domain of unknown function (DUF1849)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 67

Average sequence length: 248.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08904	B6JHD9_OLICO_31_280	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08904	Q1YI48_MOBAS_46_335	100

Sequence based PCA Plot of the family - PF08904 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=217 Length=8
Motif2 Start=44 Length=8
Motif3 Start=197 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay