3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08903

Details:

PFam ID : PF08903

PFam Domain Description : Domain of unknown function (DUF1846)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 151

Average sequence length: 471.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08903	B8FMC4_DESAA_8_285	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08903	B5XM01_STRPZ_1_480	100

Sequence based PCA Plot of the family - PF08903 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=18
Motif2 Start=27 Length=8
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay