3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08902

Details:

PFam ID : PF08902

PFam Domain Description : Domain of unknown function (DUF1848)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 167

Average sequence length: 258.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08902	B8FMC4_DESAA_8_285	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08902	B8FMC4_DESAA_8_285	100

Sequence based PCA Plot of the family - PF08902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=26
Motif2 Start=269 Length=8
Motif3 Start=47 Length=14
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay