3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08900

Details:

PFam ID : PF08900

PFam Domain Description : Domain of unknown function (DUF1845)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 70

Average sequence length: 207.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08900	D3SGP5_THISK_12_235	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08900	D1DP19_NEIGO_120_351	100

Sequence based PCA Plot of the family - PF08900 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=21
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay