3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08897

Details:

PFam ID : PF08897

PFam Domain Description : Domain of unknown function (DUF1841)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 95

Average sequence length: 130.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08897	D9VHW2_9ACTO_395_520	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08897	Q0F286_9PROT_10_149	100

Sequence based PCA Plot of the family - PF08897 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=51 Length=8
Motif2 Start=3 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay