3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08895

Details:

PFam ID : PF08895

PFam Domain Description : Domain of unknown function (DUF1840)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 101

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08895	C3XBU7_OXAFO_66_128	28

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08895	C3X5M3_OXAFO_10_138	100

Sequence based PCA Plot of the family - PF08895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay