3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08893

Details:

PFam ID : PF08893

PFam Domain Description : Domain of unknown function (DUF1839)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 40

Average sequence length: 297.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08893	Q7CWR2_AGRT5_1_207	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08893	B2GH19_KOCRD_30_354	100

Sequence based PCA Plot of the family - PF08893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=231 Length=17
Motif2 Start=25 Length=8
Motif3 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay