3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08892

Details:

PFam ID : PF08892

PFam Domain Description : YqcI/YcgG family

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 107

Average sequence length: 206.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08892	A7ISJ8_MYCPJ_89_313	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08892	A7ISJ8_MYCPJ_89_313	100

Sequence based PCA Plot of the family - PF08892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=123 Length=11
Motif2 Start=205 Length=8
Motif3 Start=217 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay