3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08889

Details:

PFam ID : PF08889

PFam Domain Description : WbqC-like protein family

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 291

Average sequence length: 160.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08889	D2RTV4_HALTV_9_109	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08889	Q08MW0_STIAD_38_272	100

Sequence based PCA Plot of the family - PF08889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=109 Length=11
Motif2 Start=7 Length=8
Motif3 Start=90 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay