3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08888

Details:

PFam ID : PF08888

PFam Domain Description : HopJ type III effector protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 100

Average sequence length: 109.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08888	B2SM47_XANOP_2_83	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08888	Q00TR9_OSTTA_218_331	100

Sequence based PCA Plot of the family - PF08888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=33 Length=8
Motif3 Start=9 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay