3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08887

Details:

PFam ID : PF08887

PFam Domain Description : GAD-like domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 86

Average sequence length: 100.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08887	B2SM47_XANOP_2_83	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08887	C9D1V6_9RHOB_13_124	98.8

Sequence based PCA Plot of the family - PF08887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=64 Length=8
Motif3 Start=30 Length=11
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay