3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08886

Details:

PFam ID : PF08886

PFam Domain Description : Glutamate-cysteine ligase

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 80

Average sequence length: 390.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08886	A4BSB7_9GAMM_47_309	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08886	E4QN66_METS6_1_400	100

Sequence based PCA Plot of the family - PF08886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=140 Length=8
Motif2 Start=98 Length=8
Motif3 Start=54 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay