3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08885

Details:

PFam ID : PF08885

PFam Domain Description : GSCFA family

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 171

Average sequence length: 206.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08885	D5ATP4_RHOCB_31_244	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08885	C9RPH1_FIBSS_20_281	100

Sequence based PCA Plot of the family - PF08885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=128 Length=8
Motif2 Start=192 Length=8
Motif3 Start=7 Length=8
Motif4 Start=235 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay