3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08883

Details:

PFam ID : PF08883

PFam Domain Description : Dopa 4,5-dioxygenase family

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 138

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08883	D0MY23_PHYIT_14_140	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08883	D0MY23_PHYIT_14_140	100

Sequence based PCA Plot of the family - PF08883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=61 Length=11
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay