3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08882

Details:

PFam ID : PF08882

PFam Domain Description : Acetone carboxylase gamma subunit

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 53

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08882	C7MWQ4_SACVD_46_136	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08882	D3UGZ1_HELM1_1_90	100

Sequence based PCA Plot of the family - PF08882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=28 Length=8
Motif3 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay