3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08881

Details:

PFam ID : PF08881

PFam Domain Description : CVNH domain

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 159

Average sequence length: 103.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08881	D8QSH7_SELML_92_154	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08881	Q7S460_NEUCR_78_221	100

Sequence based PCA Plot of the family - PF08881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay