3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08880

Details:

PFam ID : PF08880

PFam Domain Description : QLQ

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 144

Average sequence length: 36.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08880	F0ZGL4_DICPU_37_63	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08880	Q7Z1V5_TETTH_61_97	90.9

Sequence based PCA Plot of the family - PF08880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay