3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08879

Details:

PFam ID : PF08879

PFam Domain Description : WRC

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 109

Average sequence length: 44.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08879	A4RUG4_OSTLU_374_410	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08879	A5BYR6_VITVI_1_43	97.2

Sequence based PCA Plot of the family - PF08879 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay