3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08878

Details:

PFam ID : PF08878

PFam Domain Description : Domain of unknown function (DUF1837)

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 131

Average sequence length: 220.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08878	C3FCA6_BACTU_271_510	68.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08878	C2TTG3_BACCE_3_257	100

Sequence based PCA Plot of the family - PF08878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=46 Length=8
Motif3 Start=92 Length=8
Motif4 Start=210 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay