3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08877

Details:

PFam ID : PF08877

PFam Domain Description : MepB protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 89

Average sequence length: 114.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08877	C6N3E9_9GAMM_1_40	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08877	E6RJG7_PSEU9_38_180	100

Sequence based PCA Plot of the family - PF08877 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay