3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08876

Details:

PFam ID : PF08876

PFam Domain Description : Domain of unknown function (DUF1836)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 225

Average sequence length: 103.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08876	B9WV01_STRSU_6_140	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08876	B9WV01_STRSU_6_140	100

Sequence based PCA Plot of the family - PF08876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=90 Length=8
Motif2 Start=73 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay