3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08874

Details:

PFam ID : PF08874

PFam Domain Description : Domain of unknown function (DUF1835)

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 116

Average sequence length: 117.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08874	C5BUG1_TERTT_1_119	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08874	A6LZQ3_CLOB8_5_130	100

Sequence based PCA Plot of the family - PF08874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=101 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay