3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08873

Details:

PFam ID : PF08873

PFam Domain Description : Domain of unknown function (DUF1834)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 54

Average sequence length: 173.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08873	A0LJG8_SYNFM_3_145	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08873	Q7P163_CHRVO_5_219	100

Sequence based PCA Plot of the family - PF08873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay