3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08872

Details:

PFam ID : PF08872

PFam Domain Description : KGK domain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 42

Average sequence length: 102.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08872	A0YWE4_LYNSP_6_141	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08872	B4VZC9_9CYAN_6_156	100

Sequence based PCA Plot of the family - PF08872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay