3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08870

Details:

PFam ID : PF08870

PFam Domain Description : Domain of unknown function (DUF1832)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 78

Average sequence length: 112.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08870	A5G4D6_GEOUR_7_125	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08870	A5G4D6_GEOUR_7_125	100

Sequence based PCA Plot of the family - PF08870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay