3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08869

Details:

PFam ID : PF08869

PFam Domain Description : XisI protein

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 129

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08869	C0ZBS8_BREBN_2_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08869	D2QD74_SPILD_1_115	100

Sequence based PCA Plot of the family - PF08869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=68 Length=8
Motif3 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay