3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08868

Details:

PFam ID : PF08868

PFam Domain Description : YugN-like family

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 67

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08868	C0ZBS8_BREBN_2_112	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08868	Q5WDX1_BACSK_2_137	100

Sequence based PCA Plot of the family - PF08868 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=47 Length=8
Motif3 Start=79 Length=8
Motif4 Start=31 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay