3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08867

Details:

PFam ID : PF08867

PFam Domain Description : FRG domain

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 247

Average sequence length: 104.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08867	B6W7K5_9FIRM_2_50	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08867	Q1YJY8_MOBAS_55_211	100

Sequence based PCA Plot of the family - PF08867 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay