3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08864

Details:

PFam ID : PF08864

PFam Domain Description : UPF0302 domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 62

Average sequence length: 104.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08864	B3ZX84_BACCE_9_118	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08864	D5XE28_THEPJ_9_117	100

Sequence based PCA Plot of the family - PF08864 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay