3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08863

Details:

PFam ID : PF08863

PFam Domain Description : YolD-like protein

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 288

Average sequence length: 84.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08863	E5W6A7_9BACI_2_102	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08863	E5W6A7_9BACI_2_102	94.4

Sequence based PCA Plot of the family - PF08863 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=20 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay