3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08862

Details:

PFam ID : PF08862

PFam Domain Description : Domain of unknown function DUF1829

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 54

Average sequence length: 83.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08862	C5EAH6_BIFLI_22_65	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08862	F0DGR0_STAAU_167_253	100

Sequence based PCA Plot of the family - PF08862 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay